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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa12LNT0126400.1

ATATAAATGGATCAGCACAACAGGGAGAATTATATATAAATGGATCAACACTACAGAGTTTATTGGATCGAAGAACCCACATCATGTATGTACTCTCTAAATGAGCTATCTCATCTATATAAATACAGAGTTCATTAAGGCATTTCACATGGATGACTATTTAGCCAGATTTGCATATCTGACAGTTCTCAAAGTACCAGCTACCTTCACGATTGGTTTGATTCCTTATAATGGAGTAAGATTCTTGTTCGCTGAAAGTACCTTTCGGCGCAGGAGGAACGGTGGCGTGAGTATGGATAGGCAGCGGTGGCTCTTGAGGCGGCAGCGGCGTCGCGTTGTCGTTGTCGGTTGTGGATGGCGACCTCCTCAGTCTCCACTGCCTCTTTTGTTGACCTGTTGACCAGCAGTGATCTGGGGAAGATGCAAAAATGAAAGCTCGCTCGAATTCAGAACTTGCCAAAACTGAAAGCCTTCAACAGGGACCCGGCCATCGAGCTCGAATTCAAAACTTGCCAAAACTGAGCCTTCAACAGCGACCCAGTCATCGAGGAGCAATAGTTATCATATACATGCACATGCACCAGCAAACTTGAAACCAAAACAAAATCAAGAACAATGTGGATCCCCTTGCACTGGTCTCACACAAGACACATTAATTAAAAAAACTGAAACTTCTATCCCTGCTAGGATATGTCTATACACAGTTGCATTGTACAAAAAGGCAAGAATACCGGTCTTGGAGAGGCGAGAATCGGCGGCGTGACGGCGCGAGGGAGGCGGGGGATCGGCGAGGACGGGACAGAGGAGATGCAGGATCGGCGACGGCGACCTGGGGGATGGGGATCGGCGCCGACTGAACCCCGCGGCGCGCCCGACGAGGAGGGGGGAATCGGCGGCGTGACGGCGCGACGGAGGAAGGGGATCGGCGAGGAGTTCACGCGACGACGACGGAGGGGATCGGCCAGGACTTCACGCGACGACGACGGAGGGGATCGGCCAGGACTTCACGCGACGACGACGGAGGGGCGGCGCGGGAGAGGAGAGAAATCGTGGATGGGGAATCGGTGACGAGCGGGTGGGCGACGTTGGCTGAAGAGAGGATGCGGCGTGATTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.52913
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0126400.1 12 13022419 G A
Osa12LNT0126400.1 12 13022657 A G
Osa12LNT0126400.1 12 13023425 G A
Osa12LNT0126400.1 12 13025258 A G
Osa12LNT0126400.1 12 13024619 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0126400.1 osa-miR395b Cleavage 4.5 12.297 1 21
Osa12LNT0126400.1 osa-miR395d Cleavage 4.5 12.297 1 21
Osa12LNT0126400.1 osa-miR395e Cleavage 4.5 12.297 1 21
Osa12LNT0126400.1 osa-miR395g Cleavage 4.5 12.297 1 21
Osa12LNT0126400.1 osa-miR395h Cleavage 4.5 12.297 1 21
Osa12LNT0126400.1 osa-miR395i Cleavage 4.5 12.297 1 21
Osa12LNT0126400.1 osa-miR395j Cleavage 4.5 12.297 1 21
Osa12LNT0126400.1 osa-miR395k Cleavage 4.5 12.297 1 21
Osa12LNT0126400.1 osa-miR395l Cleavage 4.5 12.297 1 21
Osa12LNT0126400.1 osa-miR395s Cleavage 4.5 12.297 1 21
Osa12LNT0126400.1 osa-miR395c Cleavage 4.0 12.297 1 21
Osa12LNT0126400.1 osa-miR395a Cleavage 4.0 12.297 1 21
Osa12LNT0126400.1 osa-miR167e-3p Cleavage 4.5 15.481 1 21
Osa12LNT0126400.1 osa-miR167i-3p Cleavage 4.5 15.481 1 21
Osa12LNT0126400.1 osa-miR395m Cleavage 4.5 12.297 1 21
Osa12LNT0126400.1 osa-miR395n Cleavage 4.5 12.297 1 21
Osa12LNT0126400.1 osa-miR395o Cleavage 5.0 12.297 1 21
Osa12LNT0126400.1 osa-miR395p Cleavage 4.5 12.297 1 21
Osa12LNT0126400.1 osa-miR395q Cleavage 4.5 12.297 1 21
Osa12LNT0126400.1 osa-miR395r Cleavage 4.5 12.297 1 21
Osa12LNT0126400.1 osa-miR2926 Translation 4.0 16.5 1 20
Osa12LNT0126400.1 osa-miR2930 Cleavage 3.0 15.158 1 22
Osa12LNT0126400.1 osa-miR395y Cleavage 4.5 12.297 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0126400.1 12 nan Physiological trait Eating quality RM247 RM179
Osa12LNT0126400.1 12 qtl12.1 Resistance or Tolerance Drought tolerance RM7195 RM28166
Osa12LNT0126400.1 12 qtl12.1 Resistance or Tolerance Drought tolerance RM7195 RM28166
Osa12LNT0126400.1 12 qtl12.1 Resistance or Tolerance Drought tolerance RM7195 RM28166
Osa12LNT0126400.1 12 nan Resistance or Tolerance Other soil stress tolerance RG9 RG241
Osa12LNT0126400.1 12 nan Resistance or Tolerance Other soil stress tolerance RG9 RG241
Osa12LNT0126400.1 12 nan Resistance or Tolerance Other soil stress tolerance RG9 RG241
Osa12LNT0126400.1 12 nan Morphological trait Seed RG543 RG81
Osa12LNT0126400.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus