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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0132300.1

AACCCTAGCTCGCAGTCGCACACCCTCCGGCATGTGATGGGGCACGCGACGTGAAACGCCATGGGCGAGGAGGGCGAAGGTTTGGACGAGGGGAGGAGAGAGCGAGGCCAGTTTGAATCGAATTCGCGTTGGGGCGGGATTTGAAATTCGGGGTAGATTTGAGGTTTCACTTACGGCCACCACAGATTCGCGGTGGGGATTTGATCGATTGGATTTCGATTTGGCCCGCGATTTGGAAAAATTTTTGGAGGCGGAGGGAAGGGGTGGTGTTGGGGTGAGG

Coding Potentia
Explanation CPC Score
noncoding -1.18073
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0132300.1 osa-miR156j-3p Cleavage 4.5 18.264 1 22
Osa12LNT0132300.1 osa-miR408-3p Cleavage 4.5 20.686 1 21
Osa12LNT0132300.1 osa-miR2118b Cleavage 5.0 20.686 1 22
Osa12LNT0132300.1 osa-miR2118g Cleavage 5.0 20.686 1 22
Osa12LNT0132300.1 osa-miR2118n Cleavage 5.0 20.686 1 22
Osa12LNT0132300.1 osa-miR5077 Translation 4.5 23.567 1 19
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0132300.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0132300.1 12 nan Morphological trait Seed RG543 RG81
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus