>Osa12LNT0132500.1

GTCCACAATATCAAATATCACACATTTCACTGTGTGGGAGAACTCAGTTTAAACACATTCTTAGTAACTCAGATAAATCACAAACTAAACAGGTTTATGAGTGGAATGAGCTGAGCAGCAGGAGACACTATAATGATGCCCTGACTTTCATCATGCTGTCTGAAGCAATAAATCTTCAGGAACCTCAGAAAATTGCTACCATCAAATAAATTATCTGGAATATCCCTACCAGTCGATTTCAAGGAACCTGGCGGAGAACAAGATCAGCGATGTGGAGGGGCTGCACCGGCTGCTGAAGCCGACGTGGAGGGTGCCGACACTTCGAAGGCTACGGGCCAAGAACCAAGAGCCCTCTCCTCCTCCTCCTCCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCGGCATCCAAGAACCCTCCCGTGTCCCGGCCATGCCGCCGCCGGATCTGGAGCTGAATAAGCGGTCGGCGTCGGCGTCGGCGCCGGAGCACGACCAGACGGCCGGCCCCTACGGCACGGTGCGTG

Explanation	CPC Score
noncoding (weak)	-0.679578

Transcript ID	Chromosome	Locus	Ref	Alt
Osa12LNT0132500.1	12	20844178	A	C
Osa12LNT0132500.1	12	20844475	T	G
Osa12LNT0132500.1	12	20845245	T	C
Osa12LNT0132500.1	12	20845637	T	C
Osa12LNT0132500.1	12	20845675	A	G
Osa12LNT0132500.1	12	20845699	G	A
Osa12LNT0132500.1	12	20845772	A	G
Osa12LNT0132500.1	12	20844499	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa12LNT0132500.1	DTM_#DNAt_MULE_japo_Os0087	Chr12	-	20844478	20844861	383

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0132500.1	osa-miR440	Cleavage	2.5	24.611	1	24
Osa12LNT0132500.1	osa-miR396f-5p	Translation	4.5	15.763	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0132500.1	12	qDLA-12-3	Resistance or Tolerance	Blast resistance	RG463	RZ816
Osa12LNT0132500.1	12	nan	Morphological trait	Seed	RG543	RG81

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus