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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0132700.1

CATTAATGCCGCTCTCTCTCTCAGCTCATCAGCTCTGCTCGCTCCAAGAAGAGAAACGCCATTGATTGGTGGAGAGAGAGAGAGAGAGAAGGATTTCGTATCTCCACCTCCCGAGAAGCGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGGGAGAGAAGCTTCGATCCGTGAGATTTGGCCCCGATTTCTTGAGTTCTTTCGAGATTTTTTTTCTCAAGTTGTTTCGATTTCGAAGTGCGTCCAAGAATCGGAGACCTCCATGTCCGCGAGATTGGTTGTTCTGTGAGTTTGAGGAGGAGATGACGGGGGTGGTGGTGGTGTCGCCGTCGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.912279
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0132700.1 12 21206627 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0132700.1 osa-miR5833 Cleavage 3.5 20.112 1 21
Osa12LNT0132700.1 osa-miR156b-3p Cleavage 5.0 20.138 1 21
Osa12LNT0132700.1 osa-miR156b-3p Cleavage 4.5 15.94 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0132700.1 12 nan Morphological trait Seed RG543 RG81
Osa12LNT0132700.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus