\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0132900.1

ATACAAGAGTTTTGGAAGATTTATTCAGAACAATTTCATGTATTAAACTAACTGAAACTATCATGTCTGCTTTCTTCCATATACCTTGTTTGTCAAATAATTGTTATTTGACAAGAAAGTGTGTAACTAAACTTTTGTAACAAATAGAATTACATCATTGAATTGCAAGAACAAAAATTCTGAGAGGAGTTAAAAGTTCAGATGGAATCCCCATCGATGAATTTTTCTGATAATGAATGCGGAAAATAATGCCTTGAATTAAAGGGGAAAAAAAATGCCCTCCGACTAAACATCTATTGGTCTGCATCTTCCTAGTCATGGAGTACTAGCACTAAATAGCAGTCATTCCTGCGAGTTCACGAAGCTTCTCACACACAACGAAGGTGATTGCTGTCTGAGGACCTAATCTTGCAAAGGTGGCAAACCCACCTTTATAAAGCGACGTTACACCCTCTGTCACCACAACCTGATAACCACAATGGAAGCCATTCCTGTATACTCTGGCACCTTTGCACTCACGCTGCAACATTAACCTTGTTTTGATCATGTCTATAGGTGCAGTCACAAGAGTACTAGCTGTTCCCGCTACGCAACTCGACATGAGATGTAATTGGGGACCTTCTTCAAGTGGCGTCCACTTCAGCAATGCCTGCTTAGCCTCATCATAAGTAGCCATCTGTGATGCCGTGAGGCAGCCCGCCCTTGCCATTGCTGGGCCAACTCCTTTCCAAAGTGCTTTGACCCCTTCCTCTGCTACAATTTTCTTAAGCACCCCGATTGTACTGGTTCTGCTTGGACTCATTTGCGATCTCACCTCAATAGCATACCTTCAAAACCTCTGTTGGATTTGTCAACGCAGTTGCTAGGGCGCCCGCAATTACTCCAGATGCAAACTTAAAAGCGAAGTTTGTTGATCCAAATGCATAATTGCAGACATATTTGCAGGGCTCATATAACCCTAATCGAAGGCCACCGTAGATGACAGATCTAGTCAATGCTGGTGCCAGTCCCAGGTAGAGTGATCGAGGCCCTTCCACTTGTACCATTTGTGTAAATATTGTCCCCATTCCAACTAAGTTTCCTCTTTGCCCAGCAAGCTGCATTTGGAGCCTAACTTTGATAACATCGAGCGGGTGCGTGACGGCAGTGGCGGCGGCGACGGCGGCGCCGCTGGTGCCGAAGTGGTACAGCGCGCCGCCGTGCCCCGGCTGCATTCCTCTTCCTGATCTCGGATGGAATTCAATCAAATCGCCCTGGAAGGAAAAAAAGATCGGCGAGAAAGTAGAAAAAAAAAAGAGGAGAATTTTGTTTTCTTAGCTCTCGACCACGCGAGGCAGGGAATGAGGGAGGAGGAATCGATCGACGCGAGAGATAGTTTCAAGAAGCGAAGAAAAGAAGAAAAAAAAGATTGGACGGGATAATCTTAGTCCAAGAAGCAAAGGATTGGAGGAGAAGGAAGGAATCAAAGATCGAAGATTCAGAGGAGCAAGAAACTGGGATTCAAGAACAGAAAAAGGTGAGAAGAAGAAGAAGGAGAAGAAGATTGCGGTGGCAAATTCTGCTCCTATTCGCGTGGAGAATGCGAGGAAACGAACC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.808859
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0132900.1 12 21228951 G A
Osa12LNT0132900.1 12 21226379 A G
Osa12LNT0132900.1 12 21227513 T C
Osa12LNT0132900.1 12 21227889 A G
Osa12LNT0132900.1 12 21228093 A G
Osa12LNT0132900.1 12 21228106 G A
Osa12LNT0132900.1 12 21228819 A C
Osa12LNT0132900.1 12 21229046 T C
Osa12LNT0132900.1 12 21229099 G A
Osa12LNT0132900.1 12 21229134 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0132900.1 osa-miR169i-5p.2 Cleavage 4.0 7.495 1 22
Osa12LNT0132900.1 osa-miR1428a-5p Translation 4.5 14.607 1 21
Osa12LNT0132900.1 osa-miR2928 Translation 4.0 13.504 1 20
Osa12LNT0132900.1 osa-miR5486 Translation 5.0 20.451 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0132900.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0132900.1 12 nan Morphological trait Seed RG543 RG81
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus