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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0133300.1

CACCCACCCGGTCGTCTCCTTCCTCCCGCACGGCCTCCTCTCTCTCTCTCCCGAAAACCCTAGTTGCTTTCCTCCCTCAAATCCACACGATTCAAACATGGGATTCCAAAATTAATTAGGGAGAATTAATCCCCTTTCCTTCCTCTTCAATTGCGCCTAAGGCCTCGTTCGGATAGAGCCCGGCCTTTTCCCTCCAATCCCTAGGGATATTGGTCCACCACCCAGACCAGTGGAAATCCACCACTCGCCGCCGCCTCGCTTCTCTCGTCGCGTGCCGACGCCTCCTCCTCTCGTCGCGCGTCGCGGCGCCGCCGCCGCCTCCGTCTTCTCTCCCCGAGCGGCGCCCACGCCGCCTCTCCTCTCGTCGCGCACCGCGGCGTCGGCACCTCCCCTGCCGCATCGCATCCCTCGCGCGCGCCGCCTTCCTTCCTCCCCAGTGTCGGCGTTGCTTCCCTTTCTTCCCCGGTGCCGGCGCCTCCTCCCTTCCTCCCCGCTGTACATGCTGGACAGAGTGAAGCAGTCTTCTCCAAGCCCAGATCCACGACATCAGCCATCAGTTGAAGCAGTTCGGGGGACTCAAAGGCCGGAGGGCTTGTTCGCCAACCTAGCTCACTGAGCTGCCAAGCTCGCTTGTATTGTTAAAAAAAAAGGGTTCAAGGGCTATTCGAATGAGGAAGCGGGAGGAAGAGGATGACGATATGATTCTTTTCCTTTTCCCTGCTCTGCATCTTTTCTACTAAACACAAGTACTGCTCAGTTTTCTGATATGTGATGTCCACGGGCCTTTTGTTTGCTGCACCAATGATGCAAGGAAATGTATTATGATGTATGTCGGAAAGTGTTGTTACTAGATAGAACTATTAAGGCAATGAAGCTCAAGTTATGTCTTGTTTTCCCCTCAAAAAAAAAGTTATGTCTTGTTCGATTTAATACTTGTAACACTGAGAGATATTTGTGTCCTAAATCTCAACGTGTATTGGTTCTTCATGTTGGTTGCCTTTTTTTTTTTTGCAATATTGTAACAATTACGACATGGATTTTGCAGCAGGTCTTCAGTATTTCTTTAATTTTCTACAATTTTCGTAATTTTC

Coding Potentia
Explanation CPC Score
noncoding -1.18414
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0133300.1 12 21594761 A G
Osa12LNT0133300.1 12 21595706 T A
Osa12LNT0133300.1 12 21596476 T G
Osa12LNT0133300.1 12 21595533 T G
Osa12LNT0133300.1 12 21595097 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0133300.1 osa-miR164a Cleavage 4.5 14.736 1 21
Osa12LNT0133300.1 osa-miR164b Cleavage 4.5 14.736 1 21
Osa12LNT0133300.1 osa-miR164d Cleavage 4.5 14.736 1 21
Osa12LNT0133300.1 osa-miR164f Cleavage 4.5 14.736 1 21
Osa12LNT0133300.1 osa-miR3979-3p Cleavage 5.0 7.844 1 20
Osa12LNT0133300.1 osa-miR3979-3p Translation 4.5 10.562 1 20
Osa12LNT0133300.1 osa-miR5080 Cleavage 3.5 24.799 1 21
Osa12LNT0133300.1 osa-miR5506 Cleavage 4.5 19.907 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0133300.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0133300.1 12 nan Morphological trait Seed RG543 RG81
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus