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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0133400.1

TCTGGTTGTGTTTGACATCAGAGTTCTTACTGAATCCATCACTATCAAATTTTACATTGGTTTGCATACAGAAACATTGATCCAAGTGACATTTCTTACCAGAGGTAAGTGCATAGACTACATTATGTTAACTTAAAAGGCACCTGAACATGATATACTCCAACATGCTCCAGATTACATGTGTAAATGGTGAACCTGACAAACATCTTCTAAGAAAACTGATTTCTGCTCTGTGTGACTGCTCTGTTGCTCAAAACCAGACCCAGTCTTGATTCTGAATGTGGGTACCGACAATAAATGGTACAATGCCATATAATTTACAGAGGCTCAGCAGTATCCCTAAGATTTACAGGCTACAAACACGCTGTATTAATTTTTCCAAGCAGAGATCAAATCTTTCACTACATGCTCATGTGAGTTACAGGAGCTTCTACATCCAGTGCGATTCAAGAATCTGCATGCCTTCTTATCGCTGTTAAAAGAGCTAGAACCCATTAATCCAAAACAGCAGCTCGGGGAGAAGATCGCTCGCCGAACGACATAGAAGCGAGAGATGATGCCCACACCCTGCTGTTCATAGCTCCACCCATGAGCCTGCATTTGCTCCAGATCTTCCTCAGGTCTACAGCATGCGGCACGCATTCGAGCAGCTGGGTCAGTTTGGCAAGGATGCCAAGGTTGGCATGCCGGAAGTATTGGACCCAGATTCCTTTGATGCAGGAGAAGAACTTTGGGAAGAAGGCTACCAGTATCTTCAGGCAAATAAATAGGATGCTGAATGCTAGGTAGGGCTCACTCTTCAAAGCTTCAATAATTGAGCTTTTCCAAAGCTTCACATGCTGTGTGCTTCCAGTTCGAGCTGCGCTCCATTTCCTTGGACCAAGATATGCAATTGGTTCTTGACCAGTTACAGCAGTGTAAACATTAACTAGCGAGTCAAGCTCCTTAGAACCAACAGGCCAGTACGCATATGGTCCACAAGCTATGAGTATAGAAGGAAAGCTACGGACACCATATCTTGATAAAACAGCTGGCATGGCATTGGTTTGTTCCACAGCCAAGTGCTTAATCCGTGGAAACATTGAGCTAAGATCATCGAAGACTGGCCTCATTCTTTGTGAGAAGGGGCACCACGATGCATAGAAGAGCACGGCAGTGCATTCTTCCTTGCCACTCAACTCCTTGACAAGTTCCTCCCCATTAATCTCCTCGGCGGGGCACCGCTCCGCCGACGCGCGGCAGGACGGCCGGAGCGCGGCGGCGGCGGCGGCTGCGACGAACGGCGGCAGCCGCTCCCTCGGGCACCGCGCCTCCTCCGGCTCCGCCGCCGCCGCGGGAGGCGGCAAAGGAGCGAGGAGGAGGAGGAGGAGGAGAGGGGCGAGGAGGCGGGCGGCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.958921
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0133400.1 12 21666302 C G
Osa12LNT0133400.1 12 21666545 A G
Osa12LNT0133400.1 12 21666739 C T
Osa12LNT0133400.1 12 21667000 A G
Osa12LNT0133400.1 12 21667498 T C
Osa12LNT0133400.1 12 21668798 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0133400.1 osa-miR166a-5p Translation 4.0 12.644 1 21
Osa12LNT0133400.1 osa-miR166e-5p Translation 4.0 12.644 1 21
Osa12LNT0133400.1 osa-miR395t Cleavage 4.5 22.617 1 21
Osa12LNT0133400.1 osa-miR395c Cleavage 4.5 22.617 1 21
Osa12LNT0133400.1 osa-miR172c Translation 3.5 11.356 1 21
Osa12LNT0133400.1 osa-miR2101-3p Translation 4.0 11.974 1 22
Osa12LNT0133400.1 osa-miR2866 Cleavage 4.5 18.869 1 20
Osa12LNT0133400.1 osa-miR2868 Translation 4.0 16.451 1 20
Osa12LNT0133400.1 osa-miR395x Cleavage 4.0 22.617 1 21
Osa12LNT0133400.1 osa-miR5152-5p Cleavage 5.0 11.515 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0133400.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0133400.1 12 nan Morphological trait Seed RG543 RG81
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus